Table 1. The configuration parameters of virtual machines to process data obtained using ONT. vCPU - virtual CPU, GPU - NVidia graphic processor unit.
|
|
Procedures |
Number of processors and cores |
Memory size,
|
Cost, $/hour
|
|
|
vCPUxCores |
GPUxType |
||||
|
p3.8хlarge |
Base-calling |
32x16 |
4xV100 |
259 856 |
15.29 |
|
p3.2xlarge* |
8x4 |
1xV100 |
62 464 |
3.82 |
|
|
p2.xlarge |
mapping / quantification / quality control |
4x2 |
1xK80 |
12 288 |
1.32 |
|
t2.xlarge |
4x4 |
Нет |
32 768 |
0.42 |
|
|
t2.micro |
upload / download data |
1 |
Нет |
1 024 |
0.01 |
Note. For education to work with cloud system using test data (preloaded on the AWS MrFirst (ONT) server in the folder fast5.tutor) it is recommended to perform all operations using the configuration p3.2xlarge. Information for authorize access to AWS MrFirst (ONT) is available by request to the authors of the article.