Table 1. Selected genes of human chromosome 18. First, two genes were annotated as encoding the missing proteins (MPs), while four other genes were attributed to the category of functionally uncharacterized but translated to the protein level with high evidence (uPE1). The neXtProt knowl-edgebase was used to obtain information about the gene status, number of amino acid residues in the sequence of the isoform 1 (the longest one), single amino acid polymorphisms (SAPs) according to the dbSNP and COSMIC datasets, and the known splice forms (Iso1, Iso2, Iso3).
Gene Name |
HMSD_ |
HSBP1L1 |
ANKRD29 |
C18orf21 |
KLHL14 |
TMEM200C |
Protein Name |
Serpin-like protein HMSD |
Heat shock factor-binding protein |
Ankyrin repeat domain-containing protein 29 |
UPF0711 protein C18orf21 |
Kelch-like protein 14 |
Trans-membrane protein 200C |
NextProt AC |
NX_A8MTL9 |
NX_C9JCN9 |
NX_Q8N6D5 |
NX_Q32NC0 |
NX_Q9P2G3 |
NX_A6NKL6 |
Status |
MP |
MP |
uPE1 |
uPE1 |
uPE1 |
uPE1 |
# of aa in Iso1 |
139 |
75 |
301 |
220 |
628 |
621 |
variants (SAPs) |
111 |
56 |
231 |
166 |
385 |
648 |
splice forms |
Iso1 |
Iso1 |
Iso1, Iso3 |
Iso1, Iso2 |
Iso1, Iso2 |
Iso1 |
qPCR (cDNA copies per cell) |
||||||
Liver #1 |
0.00** |
0.88 |
0.02 |
0.37 |
0.02 |
0.33 |
Liver #3 |
0.01 |
0.47 |
0.10 |
0.33 |
0.03 |
0.42 |
Liver #5 |
0.02 |
0.59 |
0.07 |
0.22 |
0.01 |
0.52 |
HepG2 |
ND* |
1.10 |
0.02 |
2.29 |
116.38 |
0.08 |
Illumina HiSeq (FPKM) |
||||||
Liver #1 |
ND* |
3.50 |
0.00** |
4.5 |
0.00** |
0.00** |
Liver #3 |
ND* |
2.50 |
0.50 |
3.0 |
0.00** |
1.00 |
Liver #5 |
ND* |
6.00 |
0.00** |
1.5 |
0.00** |
2.00 |
HepG2 |
ND* |
6.50 |
0.00** |
17.5 |
2.50 |
0.00** |
ONT MinION (TPM) |
||||||
Liver #1 |
0.21 |
6.31 |
0.13 |
6.20 |
0.00** |
0.04 |
HepG2 |
0.00** |
6.94 |
0.00** |
16.00 |
1.11 |
0.00** |
Note.* - No reads observed. ** - Rounded to the second decimal place.