Table 2. Number of observations for peptides with different modifications for the sets to which retention factor values were fitted.
|
|
Peptide length of 10 or more residues |
Peptide length less than 10 residues |
||||||||
|
ПТМ |
N1 |
N2 |
M |
C2 |
C1 |
N1 |
N2 |
M |
C2 |
C1 |
|
[+304.21] |
3029 (8463) |
NA |
NA |
NA |
NA |
1103 (877) |
NA |
NA |
NA |
NA |
|
K(+304.21) |
NA |
55 (57) |
279 (460) |
57 (99) |
1906 (3093) |
NA |
0 (0) |
27 (29) |
0 (0) |
569 (596) |
|
[+229.16] |
61 (150958) |
NA |
NA |
NA |
NA |
22 (23346) |
NA |
NA |
NA |
NA |
|
K(+229.16) |
NA |
529 (3033) |
1896 (6587) |
293 (1475) |
28691 (80264) |
0 (0) |
181 (351) |
237 (274) |
63 (90) |
15306 (15984) |
|
T(+79.97) |
0 (0) |
0 (113) |
43 (2187) |
0 (19) |
0 (0) |
0 (0) |
0 (9) |
0 (155) |
0 (0) |
0 (0) |
|
S(+79.97) |
0 (32) |
9 (842) |
363 (12755) |
0 (261) |
0 (10) |
0 (17) |
0 (82) |
31 (887) |
0 (24) |
0 (0) |
|
Y(+79.97) |
0 (0) |
0 (69) |
0 (534) |
0 (32) |
0 (0) |
0 (0) |
0 (16) |
0 (59) |
0 (10) |
0 (0) |
|
C(+71.04) |
0 (0) |
0 (0) |
27 (100) |
0 (9) |
0 (0) |
0 (0) |
0 (0) |
0 (0) |
0 (0) |
0 (0) |
|
C(+57.02) |
254 (555) |
277 (3017) |
2330 (24527) |
273 (2805) |
0 (209) |
49 (104) |
47 (490) |
159 (1852) |
55 (502) |
0 (18) |
|
E(+57.02) |
191 (254) |
58 (128) |
170 (438) |
19 (37) |
0 (0) |
29 (43) |
0 (0) |
0 (16) |
0 (0) |
0 (0) |
|
D(+57.02) |
425 (644) |
38 (83) |
126 (285) |
12 (20) |
0 (0) |
202 (283) |
0 (0) |
0 (0) |
0 (0) |
0 (0) |
|
K(+42.01) |
NA |
0 (0) |
11 (48) |
0 (10) |
0 (8) |
0 (0) |
0 (0) |
0 (0) |
0 (0) |
0 (0) |
|
[+42.01] |
355 (2267) |
NA |
NA |
NA |
NA |
61 (305) |
NA |
NA |
NA |
NA |
|
P(+31.99) |
0 (0) |
0 (0) |
28 (163) |
0 (0) |
0 (0) |
0 (0) |
0 (0) |
0 (0) |
0 (0) |
0 (0) |
|
M(+31.99) |
0 (12) |
11 (26) |
92 (290) |
17 (37) |
0 (0) |
0 (0) |
0 (0) |
11 (17) |
0 (0) |
0 (0) |
|
K(+27.99) |
NA |
84 (109) |
243 (332) |
65 (91) |
268 (377) |
20 (21) |
13 (19) |
13 (14) |
10 (11) |
40 (59) |
|
[+27.99] |
1283 (2065) |
NA |
NA |
NA |
NA |
143 (87) |
NA |
NA |
NA |
NA |
|
M(+15.99) |
406 (848) |
444 (901) |
2776 (23639) |
340 (2712) |
0 (177) |
95 (188) |
70 (120) |
187 (922) |
36 (234) |
0 (31) |
|
P(+15.99) |
0 (0) |
0 (0) |
100 (102) |
0 (0) |
0 (0) |
0 (0) |
0 (0) |
0 (0) |
0 (0) |
0 (0) |
|
K(+14.02) |
NA |
0 (10) |
19 (55) |
0 (0) |
61 (119) |
0 (0) |
0 (0) |
0 (0) |
0 (0) |
0 (0) |
|
[+14.02] |
24 (34) |
NA |
NA |
NA |
NA |
0 (0) |
NA |
NA |
NA |
NA |
|
K(-.98) |
NA |
NA |
NA |
NA |
16 (0) |
NA |
NA |
NA |
NA |
0 (0) |
|
R(-.98) |
NA |
NA |
NA |
NA |
19 (0) |
NA |
NA |
NA |
NA |
0 (0) |
Notes. Here and in the following description of PTMs: [] – corresponds to the N-terminal modification of the main polypeptide chain; () – modification of the residue side radical or C-terminal COOH group; NA – not applicable for modification in this position due to the peculiarities of the program algorithm. The number of peptides with single PTMs is given (values less than 8 are set to zero), the number of peptides with more than one modification is given in the brackets.